Flux Proteomics is an integrated data management system for proteomics experiments. The system allows the storage and management of data from the preparation of the sample to the analysis of the results. Two-dimensional electrophoresis experiments, chromatography and mass spectrometry are managed. Flux Proteomics stores the causal relationship between the experiments, allowing the researcher to identify which experiments are related to which others, simplifying the process of tracking and controlling experimental errors. Flux Proteomics also allows the connection of the system with online databases and analysis programs to simplify the identification of proteins.